RnoEX6044093 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49880175-49882944:+
Coord C1 exon
chr13:49880175-49880321
Coord A exon
chr13:49881068-49881101
Coord C2 exon
chr13:49882749-49882944
Length
34 bp
Sequences
Splice sites
3' ss Seq
GGTTTTCCTTTCCCCAACAGGAT
3' ss Score
10.57
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGGATTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCTGTGAAGGCCATCTGCAATGCTCTGGCTGCTGTGGAGACTCCTGAGATCACGAGTGCTCTCAACCAGCTGCCTCCCTGCCCGTCACGAATGCAGCCGAAAATCCAGAAG
Seq A exon
GATCCCAGTGTGTTGACCGTGAGAGAAAACCGAG
Seq C2 exon
AGAAGGTGGTAGAAGCCTTGACAGCAGCCATCTTGGACTTAGTGGAGCTGTACTGCAGCACATTCAATGCAGACTTCCAGACAGCCGTACCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCTCTGGGGCCCTGGCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'17-13,'17-12,18-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTGGAGACTCCTGAGA
R:
GTCCAAGATGGCTGCTGTCAA
Band lengths:
121-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]