GgaEX0000568 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1593012-1593981:-
Coord C1 exon
chr26:1593835-1593981
Coord A exon
chr26:1593541-1593574
Coord C2 exon
chr26:1593012-1593207
Length
34 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTCCTCTGCAGGAT
3' ss Score
13.81
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGAGACTTCCCACTGAAGGCAGAGCGGGTGATCCAGTCGGTCATGGCCATCTGCAACGCCTTGGCTGCCGTTGAGTCGCAAGAAATCACAACAGCCCTCAACCAGATGCCCCCCTGCCCCTCCCGCATGCAGCCCAAAATCCAGAAG
Seq A exon
GATCCAAATGTTCTGGCCAAGAGGGAAAATCGAG
Seq C2 exon
AGAGGATCGTGGAGAGCCTGACGGCCGCCATCCTGGACCTGGTGGGGCTGTACTGCAGCACCTTCAATGCTGACTTCCAGACAGCTGTGCAATGGAGCCGGGAGCACGGCGTGGTGCAGGAGGCTCGCCTGCTCTCCTGCCCACTCTCCTTCACCGTTTACGCCACACACCGCATCCCCATCACCTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.917 C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCAGCCCAAAATCCAGA
R:
CCATTGCACAGCTGTCTGGAA
Band lengths:
118-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]