BtaEX6067406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2014750-2018454:-
Coord C1 exon
chr16:2018308-2018454
Coord A exon
chr16:2015751-2015784
Coord C2 exon
chr16:2014750-2014945
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTTCTCCCCAACAGGAT
3' ss Score
12.59
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGGACTTCCCACTGAAGGCCGACAGGGTGGTCCAGTCCGTCAAGGCCATCTGCAACGCCCTAGCCGCTGTGGAAACCCCTGAGATCACCAGCGCTCTCAACCAGCTGCCCCCCTGCCCTTCCCGAGTGAAGCCTAAAATCCAGAAG
Seq A exon
GATCCCACCGTCTTGGCCATGAAGGAAAACCGAG
Seq C2 exon
AGAAGGTTGTGGAAGCCCTGACGGCTGCCATCTTGGACCTGGTGGAGCTGTACTGCAACACGTTCAACGCAGACTTCCAGCCCGCGGTGCCTGGGAGCCGCAAGCACACCCTGGTTCAGGAGGCCTGCCATCTCTCGGGGCCGCTGGCCTTCACGGTCTATGCCACCCACCGCATCCCGATCACCTGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCACCAGCGCTCTCAAC
R:
GTTGCAGTACAGCTCCACCAG
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]