HsaEX6036220 @ hg38
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204455856-204457874:-
Coord C1 exon
chr1:204457728-204457874
Coord A exon
chr1:204457037-204457070
Coord C2 exon
chr1:204455856-204456051
Length
34 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCTTTTTCCCAACAGGAT
3' ss Score
13.04
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGAGACTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCCGTCAAGGCCATCTGCAACGCCCTGGCCGCCGTGGAAACCCCTGAGATCACCAGTGCTCTCAACCAGCTGCCCCCCTGCCCCTCCCGCATGCAGCCTAAAATTCAGAAG
Seq A exon
GATCCCAGTGTCTTGGCTGTGAGGGAAAACCGAG
Seq C2 exon
AGAAGGTCGTGGAAGCCCTGACCGCTGCCATCTTGGACCTGGTGGAGCTGTACTGCAACACATTCAACGCAGACTTCCAGACGGCAGTGCCCGGGAGCCGCAAGCATGACCTGGTCCAGGAGGCCTGCCATTTCGCCAGGTCCCTGGCCTTCACTGTCTATGCCACCCACCGCATCCCCATCATCTGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056-'27-31,'27-28,30-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Skipping Isoform:
ENST00000424712fB22554
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGATCACCAGTGCTCT
R:
TACAGCTCCACCAGGTCCAAG
Band lengths:
122-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains