DreEX0055526 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23416161-23419669:-
Coord C1 exon
chr11:23419523-23419669
Coord A exon
chr11:23419164-23419197
Coord C2 exon
chr11:23416161-23416356
Length
34 bp
Sequences
Splice sites
3' ss Seq
GTTTCCGTTTGCCTTTAAAGGAT
3' ss Score
9.65
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTGGAGTTGCCATTGCACGTGGAGCGTTTAGTGCAGTCTGTGAAGGCCTTGTGTACTTCACTAGCAGCTGTTGAAACACCTGACATCACTGCTGCCCTCAACCAGCTGCCAGCATGTCCCTGTAGACTACAGCCTAAAGTGCAGAAG
Seq A exon
GATGTCAGTGTCTTGGCCAAGAAAGAAAACAGAG
Seq C2 exon
TGGCAATTGTCGAGAAGTTGACTGCAGCCATTTTGGATCTTGTGGAGCTGTACTGTAGTACCTTCAACGCTAATTTCCACACCATGCCACACAGCAGCAGATCCACAGCCCCAATTCAGGAAGCTGGCATGGTCACCAATGTGCTTTCCTTCAGTGTTTACGCCGCTCATCGGGTCCCCATCACGTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCTGTTGAAACACCTGA
R:
ATGGCTGCAGTCAACTTCTCG
Band lengths:
116-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]