RnoEX6044094 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49878718-49882944:+
Coord C1 exon
chr13:49878718-49878781
Coord A exon
chr13:49880175-49880321
Coord C2 exon
chr13:49882751-49882944
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTGTATGGTCTCCCACAGGGG
3' ss Score
8.75
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCAGGCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGATGCCTTCCTACTGGCTGAA
Seq A exon
GGGGATTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCTGTGAAGGCCATCTGCAATGCTCTGGCTGCTGTGGAGACTCCTGAGATCACGAGTGCTCTCAACCAGCTGCCTCCCTGCCCGTCACGAATGCAGCCGAAAATCCAGAAG
Seq C2 exon
AAGGTGGTAGAAGCCTTGACAGCAGCCATCTTGGACTTAGTGGAGCTGTACTGCAGCACATTCAATGCAGACTTCCAGACAGCCGTACCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCTCTGGGGCCCTGGCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938-'16-14,'16-10,17-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCTTGAGTCTTCTGTT
R:
GATGGGAATACGGTGAGTGCC
Band lengths:
244-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]