MmuEX0035122 @ mm9
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134972388-134974829:+
Coord C1 exon
chr1:134972388-134972451
Coord A exon
chr1:134973903-134974049
Coord C2 exon
chr1:134974796-134974829
Length
147 bp
Sequences
Splice sites
3' ss Seq
TACTGTATGGCCTCCCACAGGGG
3' ss Score
6.4
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GCAGGCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGACGCCTTCCTGCTGGCTGAT
Seq A exon
GGGGATTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCTGTCAAGGCCATTTGCAATGCTCTGGCTGCTGTGGAGACTCCCGAGATCACGAGCGCTCTCAACCAGCTGCCTCCCTGCCCCTCGCGCATGCAGCCAAAAATCCAGAAG
Seq C2 exon
GATCCCAGCGTGTTGAGTGTGAGGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'10-12,'10-10,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCTTGAGTCTTCTGTT
R:
CTCGGTTTTCCCTCACACTCA
Band lengths:
98-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: