HsaEX0047528 @ hg19
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:HGNC Symbol;Acc:8972]
Coordinates
chr1:204426165-204429069:-
Coord C1 exon
chr1:204429006-204429069
Coord A exon
chr1:204426856-204427002
Coord C2 exon
chr1:204426165-204426198
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTGTGCCACCTCCCACAGGGA
3' ss Score
8.71
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCAGGCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGCTGGCTGAT
Seq A exon
GGAGACTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCCGTCAAGGCCATCTGCAACGCCCTGGCCGCCGTGGAAACCCCTGAGATCACCAGTGCTCTCAACCAGCTGCCCCCCTGCCCCTCCCGCATGCAGCCTAAAATTCAGAAG
Seq C2 exon
GATCCCAGTGTCTTGGCTGTGAGGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCCTGAGTCTTCTGTT
R:
CTCGGTTTTCCCTCACAGCC
Band lengths:
98-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)