BtaEX6067405 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2015751-2020709:-
Coord C1 exon
chr16:2020646-2020709
Coord A exon
chr16:2018308-2018454
Coord C2 exon
chr16:2015751-2015784
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTGTGCTGCCTCCCACAGGGG
3' ss Score
10.17
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCAGGCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGTTGGCTGAT
Seq A exon
GGGGACTTCCCACTGAAGGCCGACAGGGTGGTCCAGTCCGTCAAGGCCATCTGCAACGCCCTAGCCGCTGTGGAAACCCCTGAGATCACCAGCGCTCTCAACCAGCTGCCCCCCTGCCCTTCCCGAGTGAAGCCTAAAATCCAGAAG
Seq C2 exon
GATCCCACCGTCTTGGCCATGAAGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCCTGAGTCTTCTGTT
R:
CTCGGTTTTCCTTCATGGCCA
Band lengths:
98-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]