HsaEX0047528 @ hg38
Exon Skipping
Gene
ENSG00000133056 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr1:204457037-204459941:-
Coord C1 exon
chr1:204459878-204459941
Coord A exon
chr1:204457728-204457874
Coord C2 exon
chr1:204457037-204457070
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTGTGCCACCTCCCACAGGGA
3' ss Score
8.71
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCAGGCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGCTGGCTGAT
Seq A exon
GGAGACTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCCGTCAAGGCCATCTGCAACGCCCTGGCCGCCGTGGAAACCCCTGAGATCACCAGTGCTCTCAACCAGCTGCCCCCCTGCCCCTCCCGCATGCAGCCTAAAATTCAGAAG
Seq C2 exon
GATCCCAGTGTCTTGGCTGTGAGGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133056_MULTIEX2-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.116 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000424712fB5216
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCCTGAGTCTTCTGTT
R:
CTCGGTTTTCCCTCACAGCC
Band lengths:
98-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development