GgaEX1043806 @ galGal4
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1741492-1742479:-
Coord C1 exon
chr26:1742416-1742479
Coord A exon
chr26:1741786-1741932
Coord C2 exon
chr26:1741492-1741525
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCCTCCCTCTGCCCCACAGGGA
3' ss Score
8.87
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACAGGCTCTGAGTCTCCTCTTTGACACCTTCCACAACGAGGTGGATACATTCCTGGCAGCTGAG
Seq A exon
GGAGACTTCCCACTGAAGGCAGAGCGGGTGATCCAGTCGGTCATGGCCATCTGCAACGCCTTGGCTGCCGTTGAGTCGCAAGAAATCACAACAGCCCTCAACCAGATGCCCCCCTGCCCCTCCCGCATGCAGCCCAAAATCCAGAAG
Seq C2 exon
GATCCAAATGTTCTGGCCAAGAGGGAAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.245 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTCTGAGTCTCCTCTT
R:
CTCGATTTTCCCTCTTGGCCA
Band lengths:
98-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]