MmuEX0035122 @ mm10
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133075811-133078252:+
Coord C1 exon
chr1:133075811-133075874
Coord A exon
chr1:133077344-133077472
Coord C2 exon
chr1:133078219-133078252
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGGGGGATTTCCCACTGAAGGCT
3' ss Score
1.59
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GCAGGCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGGTGGACGCCTTCCTGCTGGCTGAT
Seq A exon
GCTGACAGGGTGGTCCAGTCTGTCAAGGCCATTTGCAATGCTCTGGCTGCTGTGGAGACTCCCGAGATCACGAGCGCTCTCAACCAGCTGCCTCCCTGCCCCTCGCGCATGCAGCCAAAAATCCAGAAG
Seq C2 exon
GATCCCAGCGTGTTGAGTGTGAGGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'19-12,'19-11,20-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.102 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCTTGAGTCTTCTGTT
R:
CTCGGTTTTCCCTCACACTCA
Band lengths:
98-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types