GgaEX1043806 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1593012-1594528:-
Coord C1 exon
chr26:1594465-1594528
Coord A exon
chr26:1593835-1593981
Coord C2 exon
chr26:1593012-1593301
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGCCTCCCTCTGCCCCACAGGGA
3' ss Score
8.87
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACAGGCTCTGAGTCTCCTCTTTGACACCTTCCACAACGAGGTGGATACATTCCTGGCAGCTGAG
Seq A exon
GGAGACTTCCCACTGAAGGCAGAGCGGGTGATCCAGTCGGTCATGGCCATCTGCAACGCCTTGGCTGCCGTTGAGTCGCAAGAAATCACAACAGCCCTCAACCAGATGCCCCCCTGCCCCTCCCGCATGCAGCCCAAAATCCAGAAG
Seq C2 exon
TATCCCAGCCCCATGTTAGGGCCACCCTATGGGACACAGCAGGGCTGCAGGTCTGGGGCAGCTCCACGTCACCCCTCTCCTTTCTCCCCTGCAGAGAGGATCGTGGAGAGCCTGACGGCCGCCATCCTGGACCTGGTGGGGCTGTACTGCAGCACCTTCAATGCTGACTTCCAGACAGCTGTGCAATGGAGCCGGGAGCACGGCGTGGTGCAGGAGGCTCGCCTGCTCTCCTGCCCACTCTCCTTCACCGTTTACGCCACACACCGCATCCCCATCACCTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'8-12,'8-10,9-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCTCTGAGTCTCCTCTT
R:
CCATTGCACAGCTGTCTGGAA
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]