DreEX6091593 @ danRer10
Exon Skipping
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23419164-23421054:-
Coord C1 exon
chr11:23420991-23421054
Coord A exon
chr11:23419523-23419669
Coord C2 exon
chr11:23419164-23419197
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTGTCACTTGTAGGTG
3' ss Score
10.6
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGAGGCACTGACACTTCTCCTAGACACTTTTCACAACGAGGCAGAGTCTTTTCTTTTATCAGAG
Seq A exon
GTGGAGTTGCCATTGCACGTGGAGCGTTTAGTGCAGTCTGTGAAGGCCTTGTGTACTTCACTAGCAGCTGTTGAAACACCTGACATCACTGCTGCCCTCAACCAGCTGCCAGCATGTCCCTGTAGACTACAGCCTAAAGTGCAGAAG
Seq C2 exon
GATGTCAGTGTCTTGGCCAAGAAAGAAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCACTGACACTTCTCCT
R:
CTCTGTTTTCTTTCTTGGCCAAGAC
Band lengths:
98-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]