RnoALTA0031286-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11236938-11237698:+
Coord C1 exon
chr3:11236938-11237020
Coord A exon
chr3:11237510-11237614
Coord C2 exon
chr3:11237615-11237698
Length
105 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTGTGCTCTGCACAGCAGGGT
3' ss Score
4.94
Exon sequences
Seq C1 exon
CCCTCCCTGTGCAGGGCGCCGCCAGCGACTCTTGGAGGACAGCTGTCACTGCCTTCAGCAGTGCTGAGCCTGGCACCTCAGAG
Seq A exon
GGTTTTAAGAGCAGCCAGGGAGATAGTGGTGTTGACTTGAGCGCGGAGTCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCTTATGGTACTCTCAAG
Seq C2 exon
CCAGATGAGATGAGTGGGCCTGGCCTGGCGGAATCCAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCAGTCTGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-42-43,42-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGACTCTTGGAGGACAG
R:
CTTGTGCTCAGACTGCTTCT
Band lengths:
146-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]