GgaALTA0001874-3/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6833078-6834036:+
Coord C1 exon
chr17:6833078-6833160
Coord A exon
chr17:6833848-6833956
Coord C2 exon
chr17:6833957-6834036
Length
109 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTCGTGCTTTGCATAGCAGGGT
3' ss Score
5.24
Exon sequences
Seq C1 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
Seq A exon
GGTTTTAAAGGCAGCCAGGGGGATAGTGGCATTGACTTGAGTGCGGAGTCTCGGGAATCCTCCGCGACCTCCTCTCAGCGCAGTTCTCCATATGGCACCCTCAAACCAG
Seq C2 exon
AGGAGATGAATGGGGCTGGCCTGGTGGACCCAAAGCCTGACTGCCAGAAGGAGCAAGTGCAGAAGCAATCTGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-25-28,25-27,25-26,25-25-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTTCAGTCTCCTGGAAGTG
R:
TGCTTCTGCACTTGCTCCTTC
Band lengths:
146-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]