GgaEX0005022 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6833078-6834894:+
Coord C1 exon
chr17:6833078-6833160
Coord A exon
chr17:6833848-6834036
Coord C2 exon
chr17:6834808-6834894
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTCGTGCTTTGCATAGCAGGGT
3' ss Score
5.24
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
Seq A exon
GGTTTTAAAGGCAGCCAGGGGGATAGTGGCATTGACTTGAGTGCGGAGTCTCGGGAATCCTCCGCGACCTCCTCTCAGCGCAGTTCTCCATATGGCACCCTCAAACCAGAGGAGATGAATGGGGCTGGCCTGGTGGACCCAAAGCCTGACTGCCAGAAGGAGCAAGTGCAGAAGCAATCTGATAAAAAG
Seq C2 exon
GACTCTGACTTCAGCTTGCCACCTGGTTCTGCTTCTGGCACAGCAGCTAATCCTGTCACCAAATTGCAGGATGCCTTGGCCAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX4-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCAGTTCAGTCTCCTGGA
R:
ATTACTGGCCAAGGCATCCTG
Band lengths:
170-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]