MmuEX6100489 @ mm9
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32074197-32075257:+
Coord C1 exon
chr2:32074197-32074279
Coord A exon
chr2:32074737-32074925
Coord C2 exon
chr2:32075060-32075257
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTCTGCACAGCAGGGG
3' ss Score
5.24
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CCCTCCCTGTGCAGGGCGCCGCCAGTGACTCATGGAGGACAGCTGTCACTGCCTTCAGCAGTACTGAGCCTGGCACCTCAGAG
Seq A exon
GGGTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCTGAGTCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCATATGGCACTCTCAAGCCTGAGGAAATTAGCGGGCCTGGCCTGGCGGAATCTAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCAGGCGGAGCACAAG
Seq C2 exon
GACTCAGAACAAGGCTCTGCACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGGTCTCTGAAAAACAGAAAGGGCTCTGAGGGGGCCGAGCGGCTGCCAGGGGCCGTTGTCCCGCCTGTTAATGGGGTGGAGATTCACGTGGACTCCGTGCTGCCGGTGCCGCCCATTGAGTTCGGAGTCAGTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262-'27-37,'27-34,30-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=1.000 C2=0.971
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGAGGACAGCTGTCACT
R:
CTGACTCCGAACTCAATGGGC
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: