BtaEX6046893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101632011-101632932:+
Coord C1 exon
chr11:101632011-101632093
Coord A exon
chr11:101632401-101632589
Coord C2 exon
chr11:101632735-101632932
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGGCCATGTGTCCTGCACAGCAG
3' ss Score
5.98
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CCCTCCCCCTTCAGGCCTCGACCAGTGACTCCTGGACCAAAGCTGCCACTGCCTTCACCAGCGCTGAGCCTGGCTCTGCTGAG
Seq A exon
CAGGGCTTTAAGAGCAGCCAGGGAGACAGCGGTGTTGACCTGAGCGCCGAGTCCCGAGAGTCCTCAGCGACCTCCTCGCAGCGCAGCTCTCCATATGGCACCCTGAAGCCCGAGGAGGCAAGCGGGCCCGGCCTGGAGCCCAAGGCCGATGGCCACAAGGAGCAGACTCAAAAGCAGTCAGAGCCAAAG
Seq C2 exon
GATTCAGAACAAGGCTCAGGACAGAGCAAGGAGCACAGACCAGGACCCATTGGCAATGAGCGCTCTCTGAAAAACAGAAAGGGCTCCGAGGGGGCTGAACGGCTGCAGGGGGCTGTGGTTCCCCCTGTTAACGGGGTGGAGATTCACGTGGACTCTGTGCTGCCGGTGCCACCCATTGAATTTGGAGTCAATCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'28-39,'28-37,29-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGACTCCTGGACCAAA
R:
CAAATTCAATGGGTGGCACCG
Band lengths:
247-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]