GgaEX0005023 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6833078-6834894:+
Coord C1 exon
chr17:6833078-6833160
Coord A exon
chr17:6834176-6834370
Coord C2 exon
chr17:6834808-6834894
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGCTTTCCTGTTAAGGAT
3' ss Score
10.23
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
CTCTTTCAGTTCAGTCTCCTGGAAGTGATTCCTGGAGCAAGCCTGTAAATACCTTCAATGGTACTGAATCTAGTTCCACTGAG
Seq A exon
GATTCAGATCAAGGCTCAGGACAGAACAAGGAACACAAGCCTGGACCAATCGGCAACGAACGCTCCCTGAAAAACAGAAAGGGTTCGGAGGGAACGGAACGGCTGGAAGGGAATATTCCCCCTGTTAATGGGGTGGAAATTCACGTGGATTCTGTACTTCCTGTGCCACCCATTGAATTTGGAGTAAATCCTAAA
Seq C2 exon
GACTCTGACTTCAGCTTGCCACCTGGTTCTGCTTCTGGCACAGCAGCTAATCCTGTCACCAAATTGCAGGATGCCTTGGCCAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX4-2/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.985 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCAGTTCAGTCTCCTGGA
R:
ATTACTGGCCAAGGCATCCTG
Band lengths:
170-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]