MmuEX6100488 @ mm9
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32074734-32075696:+
Coord C1 exon
chr2:32074734-32074925
Coord A exon
chr2:32075060-32075257
Coord C2 exon
chr2:32075610-32075696
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTGCTTTTCCACAAGGAC
3' ss Score
7.36
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
CAGGGGTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCTGAGTCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCATATGGCACTCTCAAGCCTGAGGAAATTAGCGGGCCTGGCCTGGCGGAATCTAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCAGGCGGAGCACAAG
Seq A exon
GACTCAGAACAAGGCTCTGCACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGGTCTCTGAAAAACAGAAAGGGCTCTGAGGGGGCCGAGCGGCTGCCAGGGGCCGTTGTCCCGCCTGTTAATGGGGTGGAGATTCACGTGGACTCCGTGCTGCCGGTGCCGCCCATTGAGTTCGGAGTCAGTCCAAAA
Seq C2 exon
GACTCTGATTTCAGCCTGCCACCCGGGTCTGTTTCTGGTCCTGTAGGGAATCCAGTGGCCAAGCTTCAGGACGTCTTGGCTAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262-'30-39,'30-37,33-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.971 C2=0.932
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGCCAGGGAGATAGTG
R:
CTGAAGCTTGGCCACTGGATT
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: