MmuEX6100488 @ mm10
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32219214-32220176:+
Coord C1 exon
chr2:32219214-32219405
Coord A exon
chr2:32219540-32219737
Coord C2 exon
chr2:32220090-32220176
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTGCTTTTCCACAAGGAC
3' ss Score
7.36
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
CAGGGGTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCTGAGTCTCGGGAGTCGTCTGCGACCTCCTCACAGCGCAGTTCCCCATATGGCACTCTCAAGCCTGAGGAAATTAGCGGGCCTGGCCTGGCGGAATCTAAGGCCGACAGCCACAAGGACCAAGCTCAGAAGCAGGCGGAGCACAAG
Seq A exon
GACTCAGAACAAGGCTCTGCACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGGTCTCTGAAAAACAGAAAGGGCTCTGAGGGGGCCGAGCGGCTGCCAGGGGCCGTTGTCCCGCCTGTTAATGGGGTGGAGATTCACGTGGACTCCGTGCTGCCGGTGCCGCCCATTGAGTTCGGAGTCAGTCCAAAA
Seq C2 exon
GACTCTGATTTCAGCCTGCCACCCGGGTCTGTTTCTGGTCCTGTAGGGAATCCAGTGGCCAAGCTTCAGGACGTCTTGGCTAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.971 C2=0.932
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGCCAGGGAGATAGTG
R:
CTGAAGCTTGGCCACTGGATT
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types