BtaEX6046892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101632401-101633580:+
Coord C1 exon
chr11:101632401-101632589
Coord A exon
chr11:101632735-101632932
Coord C2 exon
chr11:101633494-101633580
Length
198 bp
Sequences
Splice sites
3' ss Seq
CTCTTTGCTTTTCTGTCAAGGAT
3' ss Score
7.52
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CAGGGCTTTAAGAGCAGCCAGGGAGACAGCGGTGTTGACCTGAGCGCCGAGTCCCGAGAGTCCTCAGCGACCTCCTCGCAGCGCAGCTCTCCATATGGCACCCTGAAGCCCGAGGAGGCAAGCGGGCCCGGCCTGGAGCCCAAGGCCGATGGCCACAAGGAGCAGACTCAAAAGCAGTCAGAGCCAAAG
Seq A exon
GATTCAGAACAAGGCTCAGGACAGAGCAAGGAGCACAGACCAGGACCCATTGGCAATGAGCGCTCTCTGAAAAACAGAAAGGGCTCCGAGGGGGCTGAACGGCTGCAGGGGGCTGTGGTTCCCCCTGTTAACGGGGTGGAGATTCACGTGGACTCTGTGCTGCCGGTGCCACCCATTGAATTTGGAGTCAATCCGAAG
Seq C2 exon
GACTCTGATTTCAGCTTGCAGCCTGGCTCTGCCTCTGGTCCTGCGGGGAATCCAGTTGTCAAGCTTCAGGACGCATTGGCCAGTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'29-40,'29-39,30-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.985 C2=0.931
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGAGCAGCCAGGGAGACA
R:
GCGTCCTGAAGCTTGACAACT
Band lengths:
256-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]