RnoALTA0031299-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000433 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:RGD Symbol;Acc:1359348]
Coordinates
chr20:4392626-4394265:+
Coord C1 exon
chr20:4392626-4392765
Coord A exon
chr20:4394050-4394052
Coord C2 exon
chr20:4394053-4394265
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CACCCGACCCTTATCTGCAGGAG
3' ss Score
8.13
Exon sequences
Seq C1 exon
CTCGCTGCTGCTGCTGCTACCGCCGCTGCACCGGCTGCGCCATCCGGGACTCAGACTCCTGCGCCAGCAGTCAGGGGGCCCTGACTCTAGCTTCAGAGACCCTGTTCCAGCGCTTGCGAGCATGTCGTCAGAAAAGTCAG
Seq A exon
GAG
Seq C2 exon
ACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCACCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCAGGCTTCGTGGTGCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCTCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACCGCTTATGTCCCGGTGTATCCGGTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000433-1-6,1-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGACTCTAGCTTCAGA
R:
TGGTGGGGGAAGTGGACC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]