RnoALTA0031333-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000030073 | Prss44
Description
serine protease 44 [Source:RGD Symbol;Acc:1560940]
Coordinates
chr8:119083900-119084648:+
Coord C1 exon
chr8:119083900-119084246
Coord A exon
chr8:119084525-119084537
Coord C2 exon
chr8:119084538-119084648
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CCCTCACTAACCTGCTCCAGCTT
3' ss Score
4.01
Exon sequences
Seq C1 exon
GGCGCTGCGACAGGTTGAGGCCTTGGCGGGCGGCATGGCCTTCCAGGGCTGTGACTCCCTCCGCCTCTTGGTCTGGCTCTTGCTGCTTCAGACGCGATTGGGCAAAGCCCCTATGGTTCCAGGGACGCTACCGTCTCTTTCTCCTCTCCCGTCAGAGAATGGCCTCGATGACCCGGGTGTAAACCCACAAGAGAGGCCGCTCACAGGAATGCCTGAGACCTCGCTGCCTCTCAAACCTGGGGGTAGCATGACGCCCTTTGATTCAATGGGATTTACTCCAGGTCACTCTTTTTCATCCATGAGTCTGTCAAGGCAATCATTTCCACCATGGATTCCACCCACTTCAG
Seq A exon
CTTGTGGCCACAG
Seq C2 exon
AACTGCGAGGATAGTTGGTGGAAAGCCTGCGCCCATAAGGAAGTGGCCCTGGCAGGTGAGCCTGCAGGTCCACAAGCAGCACATCTGTGGTGGCTCCCTCATCAGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030073-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGATTCCACCCACTTCA
R:
GATGTGCTGCTTGTGGACCTG
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]