RnoINT0118770 @ rn6
Intron Retention
Gene
ENSRNOG00000030073 | Prss44
Description
serine protease 44 [Source:RGD Symbol;Acc:1560940]
Coordinates
chr8:119083921-119084681:+
Coord C1 exon
chr8:119083921-119084246
Coord A exon
chr8:119084247-119084524
Coord C2 exon
chr8:119084525-119084681
Length
278 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CCCTCACTAACCTGCTCCAGCTT
3' ss Score
4.01
Exon sequences
Seq C1 exon
CTTGGCGGGCGGCATGGCCTTCCAGGGCTGTGACTCCCTCCGCCTCTTGGTCTGGCTCTTGCTGCTTCAGACGCGATTGGGCAAAGCCCCTATGGTTCCAGGGACGCTACCGTCTCTTTCTCCTCTCCCGTCAGAGAATGGCCTCGATGACCCGGGTGTAAACCCACAAGAGAGGCCGCTCACAGGAATGCCTGAGACCTCGCTGCCTCTCAAACCTGGGGGTAGCATGACGCCCTTTGATTCAATGGGATTTACTCCAGGTCACTCTTTTTCATCCATGAGTCTGTCAAGGCAATCATTTCCACCATGGATTCCACCCACTTCAG
Seq A exon
GTGAAGTTTCTGGGCCATGACCAGAGAACTGGTCTGGACCCAGGGTGGTTGAGGCCCTGATGTAGAGGAGGATCTTAGGTCCTTGGGTGTGGGGTGTGGGCCCAACCAAGGCTTGAGATCTGAGAGGACGCCACCATTCCCTAATGAGTCTTAAAGACCCACTGCTGCCCTGGGATTTGCGGGGGTCAGAGCCTTGTTCTACAGGTTCTGAGGCTCTGGCTGGCGGTAGAGAAGCAACAGTTTACCTTCAGCCCCCTCCCCTCACTAACCTGCTCCAG
Seq C2 exon
CTTGTGGCCACAGAACTGCGAGGATAGTTGGTGGAAAGCCTGCGCCCATAAGGAAGTGGCCCTGGCAGGTGAGCCTGCAGGTCCACAAGCAGCACATCTGTGGTGGCTCCCTCATCAGCAAATGGTGGGTGATGACCGCAGCCCACTGTGTCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030073:ENSRNOT00000048655:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.2=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAACCCACAAGAGAGGCCG
R:
GGTCATCACCCACCATTTGCT
Band lengths:
306-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]