RnoALTA0033299-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005387 | Rbm3
Description
RNA binding motif protein 3 [Source:RGD Symbol;Acc:620145]
Coordinates
chrX:15100903-15101421:+
Coord C1 exon
chrX:15100903-15100996
Coord A exon
chrX:15101345-15101348
Coord C2 exon
chrX:15101349-15101421
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACATCGCTTTTTCCCAGAAGCCA
3' ss Score
0.84
Exon sequences
Seq C1 exon
GTGGTGGAGACCAGGGATATGGAAGTGGAAGATACGACAGCCGACCTGGAGGCTATGGATATGGGTATGGGCGGTCTAGAGACTACAGTGGCAG
Seq A exon
CCAG
Seq C2 exon
GGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005387-18-8,18-7,18-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGATACGACAGCCGA
R:
TCCTGAGTAGCGGTCATAGCC
Band lengths:
95-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]