BtaALTA0024675-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000025848 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
Coordinates
chrX:91769990-91770790:+
Coord C1 exon
chrX:91769990-91770095
Coord A exon
chrX:91770733-91770736
Coord C2 exon
chrX:91770737-91770790
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATATGTTTTTTCCCCAGAAGCCA
3' ss Score
1.29
Exon sequences
Seq C1 exon
GTGGTGGGGACCAGGGCTATGGAAGTGGCAGGTATGACAATCGACCTGGAGCATATGGATTTGGATACGGATATGGATATGGAAGGTCCAGAGACTATGGTGGCAG
Seq A exon
CCAG
Seq C2 exon
GGTGGTTATGACCGCTACTCAGGGGGAAATTACAGGGACAATTATGACAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025848-12-11,12-10,12-9-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGGTATGACAATCGACC
R:
CCCCCTGAGTAGCGGTCATAA
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development