BtaALTA0024675-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000025848 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
Coordinates
chrX:91769990-91770790:+
Coord C1 exon
chrX:91769990-91770095
Coord A exon
chrX:91770730-91770736
Coord C2 exon
chrX:91770737-91770790
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TACATATGTTTTTTCCCCAGAAG
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTGGTGGGGACCAGGGCTATGGAAGTGGCAGGTATGACAATCGACCTGGAGCATATGGATTTGGATACGGATATGGATATGGAAGGTCCAGAGACTATGGTGGCAG
Seq A exon
AAGCCAG
Seq C2 exon
GGTGGTTATGACCGCTACTCAGGGGGAAATTACAGGGACAATTATGACAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025848-12-11,12-10,12-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGGTATGACAATCGACC
R:
CCCCCTGAGTAGCGGTCATAA
Band lengths:
107-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development