HsaALTA0007056-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000102317 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:9900]
Coordinates
chrX:48434896-48435497:+
Coord C1 exon
chrX:48434896-48434992
Coord A exon
chrX:48435414-48435420
Coord C2 exon
chrX:48435421-48435497
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GTGTTTTTTTTCCCCCCCAGAAA
3' ss Score
11.85
Exon sequences
Seq C1 exon
GTGGTGGGGACCAGGGCTATGGGAGTGGCAGGTATTATGACAGTCGACCTGGAGGGTATGGATATGGATATGGACGTTCCAGAGACTATAATGGCAG
Seq A exon
AAACCAG
Seq C2 exon
GGTGGTTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAAATGAGACATGCACATAATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102317-14-14,14-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.415
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACAGTCGACCTGGAGGG
R:
ATTTCCTCCTGAGTAGCGGTCA
Band lengths:
92-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)