RnoALTA0033315-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004673 | Rbm43
Description
RNA binding motif protein 43 [Source:RGD Symbol;Acc:1306676]
Coordinates
chr3:37442670-37445907:-
Coord C1 exon
chr3:37445871-37445907
Coord A exon
NA
Coord C2 exon
chr3:37442670-37442784
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
AGCACAATTTCCTTAGGTAGGAC
3' ss Score
-0.67
Exon sequences
Seq C1 exon
GGCCTTCCCGCTGCCTGAGCATCTCCTCCCTGCCCAG
Seq A exon
NA
Seq C2 exon
GACCTGCGTGCCATCTCATCTTGACTCAGCTACTGGTTGAAAGGACAGCGATTCCGAGACCCTGCATCTTCTGGGCCATCACCACCACCGCCTTAGTTTTCTGAATTCCACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004673-1-1,1-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCATCTCCTCCCTGCC
R:
GTGGTGATGGCCCAGAAGATG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]