RnoALTD0025251-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000004673 | Rbm43
Description
RNA binding motif protein 43 [Source:RGD Symbol;Acc:1306676]
Coordinates
chr3:37442670-37445971:-
Coord C1 exon
chr3:37445871-37445971
Coord A exon
chr3:37445763-37445870
Coord C2 exon
chr3:37442670-37442788
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
3' ss Seq
TAAAAGCACAATTTCCTTAGGTA
3' ss Score
3.03
Exon sequences
Seq C1 exon
GCTGTGTCTCCAGGGCGACAGGAACTAGAAAACGAAAGTGGAACCTGCTCGCTGCCAGCTTTTAGGCCTTCCCGCTGCCTGAGCATCTCCTCCCTGCCCAG
Seq A exon
GCAAGTAGTTTTTCCCCTGGTTTGCAGTGCAGGGAGGCGCGCCGAGGGTCCCAAAGCATGAGTTCCGCGCGGTCGCGCGCCCCGAAGTGGCCATCGCGGGAGCGGCAG
Seq C2 exon
GTAGGACCTGCGTGCCATCTCATCTTGACTCAGCTACTGGTTGAAAGGACAGCGATTCCGAGACCCTGCATCTTCTGGGCCATCACCACCACCGCCTTAGTTTTCTGAATTCCACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004673-1-0,2-0,3-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCTCCAGGGCGACAG
R:
CATCGTGGAATTCAGAAAACTAAGGC
Band lengths:
219-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]