RnoALTA0033655-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011321 | Rftn1
Description
raftlin lipid raft linker 1 [Source:RGD Symbol;Acc:1563347]
Coordinates
chr9:12740885-12761564:+
Coord C1 exon
chr9:12740885-12741029
Coord A exon
NA
Coord C2 exon
chr9:12761412-12761564
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGTTTCCCTGTTGTAGACAGCTG
3' ss Score
2.53
Exon sequences
Seq C1 exon
CGGCCGCGCCCCGCGCTCTGCCCCCACCCCCGGGGCCGCGTCGTCCGCGCGCCGCCCTGCTCTGCATGGCACAAACTTTCATCCCGGGACGCAGCACGCTGTCTCCGGGAACCCGCGCCAGGGTCGCCGCTGCTGGTCGCCTAAG
Seq A exon
NA
Seq C2 exon
CTGTCGAGATGGGTTGCAGTTTGAACAAGCTGGAGAAACGTGAAGAGAAGCGGCCTGGTAACATTTACTCTACTCTGAAGAGACCTCAGGTGGAGACCAAGATAGATGTGACCTATGAATACTGCTTTCTAGAGTTCACCACCCTGACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011321-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.109
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF152501=Raftlin=PU(13.7=98.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAACTTTCATCCCGGGA
R:
AACTGCAACCCATCTCGACAG
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]