RnoALTA0034059-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116847068-116847698:-
Coord C1 exon
chr8:116847573-116847698
Coord A exon
NA
Coord C2 exon
chr8:116847068-116847175
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGATATCA
5' ss Score
-5.21
3' ss Seq
CTTAACTCAGTGGCACCTACCCA
3' ss Score
-12.14
Exon sequences
Seq C1 exon
GAATGGTGTGTCACTGGGCACTGCCTTTGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGTCGTTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGACCTTTGCG
Seq A exon
NA
Seq C2 exon
CCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCCTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGACAGTGCTAAGTGTAGAGCTGGACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378-22-19,22-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PD(32.8=93.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCGTTCAAGGAGTCTG
R:
TCAGCAAAGGGAGGGTCCTG
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]