RnoINT0127618 @ rn6
Intron Retention
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116847065-116847698:-
Coord C1 exon
chr8:116847573-116847698
Coord A exon
chr8:116847180-116847572
Coord C2 exon
chr8:116847065-116847179
Length
393 bp
Sequences
Splice sites
5' ss Seq
GCGATATCA
5' ss Score
-5.21
3' ss Seq
CTGGCTTAACTCAGTGGCACCTA
3' ss Score
-10.23
Exon sequences
Seq C1 exon
GAATGGTGTGTCACTGGGCACTGCCTTTGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACTTCCCAGCCATCAGCCTGTCGTTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGACCTTTGCG
Seq A exon
ATATCATTTTGGGAAGGTGTCTGTGGGTGGCTTGGCATCTAGGATAAGGGTCTCCCTAGCCCAGGAGCACTGTGGGCCAGTGGCAGGCCCTGCTGCTGCACTGTACACAAGATGCAGCTTAGTTAGGTTGGTCCAAGGACAAAAGCCCCTTTAAGGTGGGTGCCATCAGCTGTCTCCATTGAGCAGGTAAGCATGAGATGACAAAGGAGTTCACCTCCCACTCCCCCCCCACTCCCACCCACCAGGCAGAGAATTGTGATGCAAATGGGGGGGGCTGCAGCTTGAATCTCTGGTTAAGTGCTGGTTAGAAAGGAGGGAGGGAGGAAGGAAACAAAGGAGGGAACAATGTATCTAAGCCTCAGGTCGGGCATTGCTGGCTTAACTCAGTGGCAC
Seq C2 exon
CTACCCAGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCCTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGCTGCTTCCAGACAGTGCTAAGTGTAGAGCTGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378:ENSRNOT00000043825:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PD(32.8=93.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGTGTGTCACTGGGCAC
R:
CACAGGGTCCAGCTCTACACT
Band lengths:
241-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]