BtaINT0125551 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51072838-51073449:-
Coord C1 exon
chr22:51073324-51073449
Coord A exon
chr22:51072953-51073323
Coord C2 exon
chr22:51072838-51072952
Length
371 bp
Sequences
Splice sites
5' ss Seq
GCGATATCC
5' ss Score
-4.39
3' ss Seq
CTGGCTTAACTCGGTGGTACCTA
3' ss Score
-6.43
Exon sequences
Seq C1 exon
GAATGGTGTGTCACTGGGCACCGCCTTTGAGAACTTATCCAGGGGCCTGGGCATGGCTTACTTCCCAGCCATCAGCCTCTCCTTTAAGGAGTCTGTGGCCTTCAACTTTGGCAGCCGTCCGCTGCG
Seq A exon
ATATCCTTTTATGAAGAAGGCAGTGGGCCGCTTGGGTGCGCTTGAGGAAGTTAGGAGCAGGGCTCCCTGCTCCCAGAGCTCTGTGGGCTGGGGCGGGCCCTGCTGCCGTGAGGAGTGAACGGGTAGGCTTAGGTGAATGTCAAGGATGATGCTTACACTAACCATCGTTGCTTTAGTTGAACAGTGAAGAGCATGAAGTGGCAAGTGGAGGTTCAGTCCACAGAGAAAGGGGAGGGAGGGGTGTGGTGCAGACTAGGCAGTCTGACCTCACAGCCCTGCCCTGGAGCCCAGGCCCCACCGCAGGGGTCTTGGCGGGAGCGGTGGGCGTGCTGAGCCACAGAGCAGCTGTTGCTGGCTTAACTCGGTGGTAC
Seq C2 exon
CTACCCAGTGGCGGGCTACCGGCCCCTGCAGGACCCGCCGAGCACCAGCCTGGTGCGGGCACAGAGGTTGCTGGGCTGCTTCCGGGCAGTGCTCAGCATGGAGCTGGACCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588:ENSBTAT00000045376:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062223=SPRY=PD(32.8=93.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGTGTGTCACTGGGCAC
R:
ACGGGGTCCAGCTCCATG
Band lengths:
240-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]