RnoALTA0035911-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64866704-64867082:-
Coord C1 exon
chr10:64866980-64867082
Coord A exon
chr10:64866805-64866823
Coord C2 exon
chr10:64866704-64866804
Length
19 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
AAGTTTCCAACTCCCCGCAGTCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ACTCCAGGGAAAAAGTCCTCTGCAGCTTCCCGGAACTCATCCTCGCCCCTATAACCGTATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACCGGA
Seq A exon
TCTCTTTCCTTTGCAGGAG
Seq C2 exon
ACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACATGCAGTCCTGCATCACAAGCCGGCGGCAGGGCTCCCAGCTCTCTGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-29-26,29-25,29-24-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCATCCTCGCCCCTAT
R:
GCTGCTCCCACCTAGATGGAA
Band lengths:
110-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]