RnoINT0133913 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64865805-64867082:-
Coord C1 exon
chr10:64866980-64867082
Coord A exon
chr10:64866824-64866979
Coord C2 exon
chr10:64865805-64866823
Length
156 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
AAGTTTCCAACTCCCCGCAGTCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ACTCCAGGGAAAAAGTCCTCTGCAGCTTCCCGGAACTCATCCTCGCCCCTATAACCGTATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACCGGA
Seq A exon
GTGAGTATCCATGTTGGCCTAGATACCTCTTCAGGACTCGTTCTTTGACCCCTTGGGTGGGTATACCTCCCCAAGGTCTGCCAAACCTTTCCCCTTTGCCTTGGGAAGGTGGATTCGGGCTCGACGAATCTTCTACAAGTTTCCAACTCCCCGCAG
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACATGCAGTCCTGCATCACAAGCCGGCGGCAGGGCTCCCAGCTCTCTGCTGTCCCTCACCTCCTGTACATACCGCCTGGGAAGAGACACCACCGACCCCTTCCCCGCCTGCAATGCCCACAGTGACCTCTTTTCTTGGCACCACTGCCCACTTAGGGCCCTTCTTTGGATTTGGCGGTGCGTGCCTCAGGTAGAACTGGCGCACATTACCAGAAGCCAACATTCTGCTTCTCTTTTGCCCTGGACCTCCAGCCCTGGAAGTTGCAGGCAGAGAAGGGGCACGTCTTACACATAGCCACCATCCAGCCCTGGCATGCAAGGACTCCAGAAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCACCAGAGGTAGAGGTCGAAATTGTTCTCAACTATGACCTCTTGGAAGTCCTGGCATACCAACACCAGCCCCTCAGGGAGGTTTTTAGTTCCTCTCTAAAGGCTTAGAATAGGACAGGTAAGCCTTCTGCCCTGTCCTGGGGAGGTGATGACTTTAAGGCATTCTAAAAGGTTCAGGGACTCTATCCCAAGCTCAGGTTGGGCCTCACTGGATACCCATGCTCCACACCAAAGCAGGACACCCTATGGCTCCCTGGCATCCCTCTACCCTGAGGAGGGAAAGCCCTTCCTTGAAATTATCTGGCTGTTACAAATGTCCCTTTTCCCACCTATCCCTCGTCTAAGCCACTTATGATGTTCCCCCTTCCTGCCACTATGTTATGGCAGGTACATTCTGGAGACGAGCAGATGTCCAAGGACCCAGGAATGTGGCACAGAACAGAAGTAAAAAATCCCCAGGAGGAATCTCAGTCTGGACCGAAGGTCACTTTGTACATATGATGTATTATATGGGGTCTGGGCTCCAGCCAGAGAACAATCTTTTATTTCTGTTGTTTCCTTATTAAAATGGTGTTTTGGAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAAAGTCCTCTGCAGCT
R:
CAGGCGGTATGTACAGGAGGT
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]