GgaINT1024900 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5911368-5912024:-
Coord C1 exon
chr19:5911922-5912024
Coord A exon
chr19:5911398-5911921
Coord C2 exon
chr19:5911368-5911397
Length
524 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGC
5' ss Score
5.07
3' ss Seq
GCAGTCTGTTTTCTTTGCAGGAA
3' ss Score
10.54
Exon sequences
Seq C1 exon
GCTGCAGGGGAAGCCAGCCCTACAGCTGCCCCTTTCCGGATCCCACCCCTATGATCACATCACCGTGGAGTCAGCATTTGACAACCCCACCTATGAGACAGGA
Seq A exon
GTAAGCACCGATCCCCACGCCCTACCAGCCAGAGTGTGCACCCTGGGGACCAGGGGTAGAATGTGACGTGCACCCCAGGACCATGGAAAGGAATGGGATATGCACCATGGGGACCATACGTGGGATGGGATGTGAACACCAAGCACTATGCATCCAATGGGCTACGTGTACCACAGGCTGTACGGTGGGTGGGACATGCATCGAAGAGCCTGTGCATATATGGGACAGGACATGCATCTCAGGGAGCATGTATAGGATGTGCATCCCTGAGGCCATAGGGCACTGATCACATGGACCATGTAGAGATGGAATGTGATTCCCAGAGGCTGCACACACATGGATGGGACCTCCATCTGATGACCACGCATGGGATGGGACACCCACCTGGGGGCCACATATGGGATGGGATATTCAACCCTGCGGCTGTCCGTGGGATGTGCCCCCCAGGTCCCCAAGGATGGGGGGGGGGGACACCTCACAGCACCAGTGAGTGTCCAACCCCTCGCAGTCTGTTTTCTTTGCAG
Seq C2 exon
GAAACGAGGGAATATGAGGTGTCCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]