MmuINT0142271 @ mm10
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77977742-77979048:+
Coord C1 exon
chr11:77977742-77977844
Coord A exon
chr11:77977845-77978012
Coord C2 exon
chr11:77978013-77979048
Length
168 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
AAGTTTCCAACTCCCCGCAGTCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
Seq A exon
GTAAGTATCCACGTGAGCCTAGATACCTCTTCAGGACTGGTTCCTTGATCCCTTGGGTGGGTATGCCTGCCTGAGGGTCCTGCTGAGCCCTCTTATTTTCCTCTGTGCCTTGGGAAGGTGGATAATTTGGGCTTGACAGCTCTTCTCCAAGTTTCCAACTCCCCGCAG
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTCTGCTGTCCCTCACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGACACATTACCAGCAGCCATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATTTAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTATATGGGGTCTGGGCTCCAGCCAGAGAACAATCTTTTATTTCTGTTGTTTCCTTATTAAAATGGTGTTTTGGAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632:ENSMUST00000093995:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTCCCCTGCAACTTCCC
R:
GGTGTCTCTTCCCAGGCAGTA
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types