GgaINT0006831 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7355209-7355570:+
Coord C1 exon
chr15:7355209-7355239
Coord A exon
chr15:7355240-7355437
Coord C2 exon
chr15:7355438-7355570
Length
198 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGGCTTTTCCTTCTTTCCAGGAA
3' ss Score
11.34
Exon sequences
Seq C1 exon
GGAGTTTGACAACCCGATTTATGAGACAGGG
Seq A exon
GTGAGTGCTGCTGTGCCTTCCCTCCCTTTTCAGCCCCCAGGGCATCTCTCACCAGTAGAGTCATAGAACTGTAAAATATTCCCAAGTTGGAAGGGACCCATAAGGATCACCGAGTCCAACTCCTGGCTCCGCAAAGCCAATGGGGTGATCATCCCAAATCGCAGCTGCTGCCCTAAAATGGCTTTTCCTTCTTTCCAG
Seq C2 exon
GAAACAAGAGAATACGAAGTTTCTATATCAAGGCAAGAGAGTCTCCAGCTGCTAACTTAATGTGCTCTCATAAACCTTCCTCAGTAACTAATCCAGAGACTATGTGGAGTTTGGTTGGACCCTTGGACCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.053
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTTGACAACCCGATTTATGA
R:
CAGGTCCAAGGGTCCAACCAA
Band lengths:
162-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]