BtaINT0131730 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68313736-68315653:+
Coord C1 exon
chr17:68313736-68313838
Coord A exon
chr17:68313839-68315552
Coord C2 exon
chr17:68315553-68315653
Length
1714 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGTGCTCCGCTTTCTCACAGGAA
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGCCGTTACTACTCCAACCTCCGCCTGCCTCTGATGTATTCCCACCCCTACAGCCAGATCACCGTGGAGACCGAGTTCGACAACCCCATCTACGAGACGGGG
Seq A exon
GTGAGTCGGTCTCCCTTCTCTCCCCGGGATCTCCCTCTTTGCTCTGAACTCGTGGACATCAAAACAAGAAGCTTAATTTCCTCTTGCTCACGATGCCGCTGACAGAAAGGCATGGCCAGTGGCTGATCCCCACCAAGACCCCAGAAGACTACTTGTGATTCTGCAGCATCACAGCCCTTCAAATTCACTGTGTGATGGTGTACAATTGTCTCCCAGTACTTGGGGGGCATAAACTTGACTTGTTCCTTGTCCCTGCTAACCTTCTCGCACTCCCACTTACTCTGAGCTCCTGCGCTGGTTATTGATTGGTGTGTGACAATATTACTGCAAATTTAGGAACCTGAAAAGGCACCCATTTATTACTTCATAGATTGTGTAGGTAAGGAGTCCAGGAACAGCTTATGCAGGTCCTCTCCTCCAGGACTCACAGGCTGCAGTTAAGGTGTCAGTCGAGGCTACGTTCTCATCTGAGGCTTGACTGTGGAAGGATCACATCCAAGCTCACATGGATGCTGATGGCATCCAGTTCCTTGCAGGTTGTTGGACCGAGGGGCTCAGTTTCTTGTAGGCTGTCAACCTCGGTTCTTTTCCGTGTGTCCCTCTTGTAGAACGACTCACAACATAGCAGCTTGGTTTTTCAAAATCAGAGAGAGAGAGAGTCCCCTTGTAAGAGGAAGCCACAGTCCTATAAAATATAAAATACAGACGTGACATCCTAACACCTTTTCTGTACTCTGTTGCTTAGAAGCAAGTCATAGGTTGTGTCCACAGTTAAGGGGAAGGGATCATACAAGCATGTGAAAGCCAGGCGGATGGGGATCATGAGGACCACCTTGGAGTCTTCCCACCACAGTCTCATCTACCATGAAACACAGACAGAATTGCTTATCTGTGTTGACCCAGTGGGAAATACAGACTTCCATTAAAGCATATGACAGCAACCCCTTCCAGGTCCAAGTCTCTGACTCCTGTATCTCCCTTCTCTGCCCTGGGAGCCTGGAGTGTATCACACACACTCAGTGAATATTGGAGAAATGGAACTGATTGCTGCCTACATGTTGTGGTCATTTTAGATTTGCCACTGGTAAGACAAAGTCATATGTTATTTTACACATATGTAGCTTGTTTCTGAATCCTCAAAGAAGGTCAAGCTGACGAAAAATAGTACTTTGGAAAGTAGACCTTATTAAGACTCATGTGTATCATTATGTGTATTAGACTTTTGTGTATCAGTCACCTAGAACTATGATAATGCTGAGTAACAAACAGCCCCTAAAGTCAGTCGCTCAAACCAAAAAGCATTAATTTGCTCATCGATCCATGGGACAGTGTTTTTGGCTAGTTTCAGCTGGGCAGTAGTCCTGGTTCAGCAGCCCTCACGTACACATCTGGGACTGGCTTGTTGGCCAGTGACCCAACTCTGCTGTCCAGAACTCTCATCTTCTCATCAGCATCTTGATCGTGCCAGAGGCCATCAAGGCATGTTCCGCTTATGTTGATGGCAGAAGGGCAGACACAGGCAGAAACACACATGTACTCTTTAAGCCCCACTTTACCATAACCCACTGGCAAAAGCAGGTCAAGGCCAGAGCCAAGAGCACTGCAAAGTCCTCTGTCCAGTGCTGGGTACAGGGAGGAGTGGAGATCCAGAACCATGCCAGGAGTCCCTCTGCCACACAAGGGGTCACCAGATCTGTGCTCCGCTTTCTCACAG
Seq C2 exon
GAAACCAGAGAGTACGAAGTTTCCATCTAGAGAGAGCTCCACGTGGGACGGGAACGTACAAATACGAACGCAGCTACAACCTCCTTGAGAGACCCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569:ENSBTAT00000008629:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCGTTACTACTCCAACCT
R:
TGGGTCTCTCAAGGAGGTTGT
Band lengths:
199-1913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development