GgaINT1024910 @ galGal4
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr15:7133468-7135058:+
Coord C1 exon
chr15:7133468-7133570
Coord A exon
chr15:7133571-7133768
Coord C2 exon
chr15:7133769-7135058
Length
198 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGGCTTTTCCTTCTTTCCAGGAA
3' ss Score
11.34
Exon sequences
Seq C1 exon
GTGCAGGTACTACTCCAGCCTCCGCCTGCCCCTCATGTACTCCCACCCCTACAGCCAGATCACAGTAGAAACGGAGTTTGACAACCCGATTTATGAGACAGGG
Seq A exon
GTGAGTGCTGCTGTGCCTTCCCTCCCCAAGCAGCCCCCAGGGCATCTCTCACCAGTAGAGTCATAGAACTGTAGAATATTCCCAAGTTGGAAGGGACCCATAAGGATCACCGAGTCCAACTCCTGGCTCCGCAAAGCCAATGGGGTGATCATCCCAAATCGCAGCTGCTGCCCTAAAATGGCTTTTCCTTCTTTCCAG
Seq C2 exon
GAAACAAGAGAATACGAAGTTTCGATATAAAGGCAAGAGAGTCTCCAGCTGCGAACTTAATGTGCTCTCATAGACCTTCCTCAGTAACTAATCCAGAGACTATGTGGAGTTTGGTTGGACCCTTGGACCTGCTGTTGTCTTTCCTTTTGCCTCCTTATTGAAGATTTTACTGTTTTCTTCACTGTATTTATTCTATTTAAACTGCTCTAGGTGTGCTGCAGAGCCGCGGGGTCTGCGCCCGGACCCTGGGGTGGGCAGCGGTGGCACATGGGGACAGAGCGCCGTCCCCCCATCCCCCGGCCATGCACCCATAGAGGGGTTTTGCAGTTGTTTTGCTGTTAAAAATTAAAAGCATCTCCATTGAAAGAGCCTGCCACCGATTGCTCAGAGCTGACATAGGCAAGGGTTTGCTGCACCCACGGCTCTACCCACAGCACGGGTGGCACGGCTGGGATGGGGGGACCGATGCTCTCTTCGGTGCCGCCACCACCACCAGGACAGCCCAAGCACTGCTGCAGGCTGCTGTGCCCCTTCGCCCCGCGGTAGTATCTCAGGGTAAGCACGGACCTGGCCCCATGGGGGCTGCTGCCTGCCTTGGGGTGCTGGGCCACGTGTCCCCAAGCCACTGGGGCCCTCAAGGTTTGCACTTTGCTCATGGGCAGAGCCCAGCCATGCGATGGCGAGGGGCAGGGGTGAAGGTGGAGACTTGCTGGGCGTGCTCCAGCATGGATATGGGGGGCAAAGGGGTAGAATCAGCCCTTAGCACCGCTCTGATGGAGGCAGACCCCACGGCAGCTTCACTTTGGGCCTCAGCATCCCCCGTGCTCCTTCACTTTGGGTGCATTCCCCGGAGCCGGGCAGTGGGCTGTGGGTGGGCAGCGATGCTCCACCACATCCCGGGCTGCTGCTGTCTCCTTTTGTCCTTGTAGAATGGCAATGTAACCATGACAATGTTGGGGAGTCTGTTTTAGTTTAGGGACGGTTAGTGCATCTCTGCAGTGTACAGCTGAGACTTAGGTTGGTTTGGTTTGGTTTTGTTTTGGGTTTGTTTTTTTTTTTTTTTGGTTTCTTTTGGTTTCCTTTTCCTTTAAAAACAACGAATGTGTGTTTGTAATTTGTAAAGGTTAAGAAAAAAAAAGAAAAAAGAAAAAGAAAAGAAAAAAAAAACGACATAAAAAAAAAAAAGTGCCAAAAAATGTACTAAGCATTTCATTTCCCTTCATACATGTCTGTTTTTATAAGAACAATGTGAAAATTGCTGGGATTAAATATTTTTGAACATGATCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTACTACTCCAGCCTC
R:
AAGACAACAGCAGGTCCAAGG
Band lengths:
243-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]