BtaINT0131713 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20879077-20880422:-
Coord C1 exon
chr19:20880320-20880422
Coord A exon
chr19:20880156-20880319
Coord C2 exon
chr19:20879077-20880155
Length
164 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
AAGTTTCCAACTCCCAGAAGTCT
3' ss Score
-2.45
Exon sequences
Seq C1 exon
GCTCCAGGGGAACAGCCCCCTGCAGCTGCCCCGGACACGACCCCGCCCTTATGACCGCATCACCGTGGAGTCAGCGTTTGATAATCCAACTTACGAGACTGGA
Seq A exon
GTAAGTACCCAGGCCAGGCTCAACACCCCAGTCAGGACCCAATTCTGTGCTCCCTTGGCCAGGTACCCCTGAGTGTCCTGCCAAGCCCTTTCACTCTTTCCTTTTTCCTCGGGAAGGTGGATTGTGGACTGGCAAGGCTTTGACAAGTTTCCAACTCCCAGAAG
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTCTCCATCTAGGTGGGGCGGCCTGGGGAAGCCGGCTCCGCCCTGCATCCCAGTCCAGCAGCAGAGCTCCCAGCTTCCTGCTCCCTTGCCCTCCACCTCCTGTACATACCACCTGGGAAGAGATGCGGCCAGTCCCTCAAGAAGTTCTGCACTTCCCGCCTGCAATACCCACCAGGGCCTATTATCTTGGGACCACTGCCCACTTAGGGCCCTTCCTTGGGTCCAAGTCAGGGGCATCTGCCTCCAGGCCAAACACAGCTGGAGCACATGCACCAAGAACCAGCATTCTCCTGACCCTCTCTCAGGCCTGGGACCTCTGGGCTGGAATTCACAGGCAGGGTGGAGTACCTCCCTCCATGTGACCACCCTCCAGCCCTGGCATGCAGCAGCCCTGACATGACAGTGGCGGAAACTGTGCCAGGGGGCTCCTCACAGGGCCGCTGCCAGTGGCCAACCCTGCTCTCAGCAGTGACCTCTGAGTAGTCCTGGCATGCTGACATCAGTCCCCTGGGGAGATCTCTAGTCTTTCTCTAAGGCCCCAGGAACGGTCAGTTCTGCCTTCTGCCCCTTCCTGGCAGAGGCAATAACGCTAAGGGATCTTAAGGGGTTTAGGGACTCTACCCCAAGCTCAGGTTGGACTTCCCTAGGCCACACCACTCATGCGCCACACCAAAGCAGGACACCCCCCGCTGCTCCCCTGGTGGCCCTACACCCTAAAAGAGGGAGATCTTCCCCTGACGTCAGTCTGGCTGTGAAAAACACCCTCTTGCCCACCTTCCCCTCCTCCAACCCCAGCGACCTGTCAGGCTTCCCTCCTGGCCACTGCGTTTTGGGATAAGGGGAGTGTCAGGCATATTCTAGAGATGCGCAGAGGTCCATGGGTGCAGGAATTTGGCATGGAACAGAGGGTCAAAGCATCCCAGGGAGAGGCCCAGGAGTTGGCTGCAGGCTACTTTGAACATGTAATGTATTATATGGGGTCTGGGCTCCAGTCAGAGAACAATCTTCTATTTCTGTTGTTTCCTTATTAAAATGGTGTTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979:ENSBTAT00000021257:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGAGTCAGCGTTTGATA
R:
GGTATTGCAGGCGGGAAGTG
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]