MmuINT0142271 @ mm9
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77791244-77792544:+
Coord C1 exon
chr11:77791244-77791346
Coord A exon
chr11:77791347-77791514
Coord C2 exon
chr11:77791515-77792544
Length
168 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
AAGTTTCCAACTCCCCGCAGTCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
Seq A exon
GTAAGTATCCACGTGAGCCTAGATACCTCTTCAGGACTGGTTCCTTGATCCCTTGGGTGGGTATGCCTGCCTGAGGGTCCTGCTGAGCCCTCTTATTTTCCTCTGTGCCTTGGGAAGGTGGATAATTTGGGCTTGACAGCTCTTCTCCAAGTTTCCAACTCCCCGCAG
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTCTGCTGTCCCTCACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGACACATTACCAGCAGCCATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGCCAACACCAGCCCCTCAGGGAGGTTTCTAGTCCCTCTCTAAAGGCTCAGAATTGGACAGTTAAGCCTTCTGCCCTGTCCTGGGAGGTGATGATTTAAGAATCCTAAAAGGTTCAGGGACTCTATTCCAAGCTCAGGCTGGGCCCCACTGGATGGATACTCACGCTCCACACCAAAGCAGGACACCCTACGGCTCTCCGGCATCCCTCTACTCTGAGGAGGGAGAGCCCTTCCTTGAAGTTTATCTGGCTGTTACAAATGTCTCCTTCCCCACCAGTCCCTCCTCTGAGCCACTTACCATGTTCCCCCTTCCTGCCACTGTGTTATGGCATGCCAGGAGAGGGCAGCTACATTCTGGAGAGGAGCAGATGTCCAAGGACCCAGGAATGTGGCAGAAGTCAAGAACCCCCAGGAGCAATCTCAGTCCGGACCGAGGCCACTTTGTACATATGATGTATTATATGGGGTCTGGGCTCCAGCCAGAGAACAATCTTTTATTTCTGTTGTTTCCTTATTAAAATGGTGTTTTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-Sez6:NM_021286:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTCCCCTGCAACTTCCC
R:
GGTGTCTCTTCCCAGGCAGTA
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: