RnoALTA0036898-5/5 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5571158-5571782:-
Coord C1 exon
chr3:5571574-5571782
Coord A exon
chr3:5571224-5571310
Coord C2 exon
chr3:5571158-5571223
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
ACAGACGCTTTGTGTTCCAGAGT
3' ss Score
6.6
Exon sequences
Seq C1 exon
GTCTTCTGCTGCCTTGGCGATGGCTTGCCGTGGCCGGGGAGGGGCCTGTTCTGGTCATGATCCTGCTGCTTAGCTTCATGCCCAACTCGCCTCGCTTCCTACTGTCTAAGAGCCGGGATGAGGAAGCACTGCAGGCGCTGATCTGGCTGCGAGCGGACTCTGAGGTCCACTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
Seq A exon
AGTAGCCGAGTGTCGTGGGCGGAGGCCTGGGAGCCCCGTGTGTACCGGCCTATTCTCATTACAGTGCTGATGCGTTTTCTGCAGCAG
Seq C2 exon
CTGACAGGCATCACTCCCATCCTCGTGTACCTACAGACCATCTTCGACAGCACGTCCGTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-9-8,9-7,9-6,9-5,9-4-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(21.6=94.3)
A:
NA
C2:
PF0008319=Sugar_tr=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGCTTAGCTTCATGC
R:
AGGTACACGAGGATGGGAGTG
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]