RnoALTA0036949-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2453033-2453415:-
Coord C1 exon
chr3:2453309-2453415
Coord A exon
chr3:2453153-2453155
Coord C2 exon
chr3:2453033-2453152
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGA
5' ss Score
1.29
3' ss Seq
CTTACCTGCCTTGCCCTCAGCAG
3' ss Score
7.41
Exon sequences
Seq C1 exon
AGACCAGTGAGGGACCTGGGGAGCCAGTGTCCCGTTTCTTCTGCTCCCTGAAACTAGACTGGGCTCATCTGATAACCACCGGAGGTCACCGTATCCATCTGTCTGTG
Seq A exon
CAG
Seq C2 exon
ATCTAGGATTGGGCCTGGGTCTTCCACTTCTTGAAATCCATGCCGAATTCCCTTGCTGGCGACCAGGTCCCCAACCCTACTCTGGATGCAATTGGCCTGGTGGACTGGAGTCTGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451-4-4,4-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.241
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCGTTTCTTCTGCTCC
R:
GACCCAGGCCCAATCCTAGAT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]