RnoALTA0037165-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114973882-114976467:+
Coord C1 exon
chr4:114973882-114973940
Coord A exon
chr4:114976267-114976288
Coord C2 exon
chr4:114976289-114976467
Length
22 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
TTCTGTGCTTGGTCTCCAAGTAC
3' ss Score
3.36
Exon sequences
Seq C1 exon
TGAATACAACCACTGTCAACGACTCAGCCCTGCTGGTGCCAAACACCAACATGTCTGTG
Seq A exon
TACACCCCCCTTAACCTCACAG
Seq C2 exon
CGCTGGACTGGTCTCTGCTGAGCAAGAAGGAATGTCTGAGCTATGGGGGGCGCCTGCTTGGGAGCTCCTGCCAGTTCGTCCCCGACTTGGCCCTCATGTCCTTCATCCTTTTCTTTGGGACTTACTCCATGACCTTGACTCTGAAGAAATTCAAATTCAGCCGCTATTTCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-20-28,20-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(3.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCACTGTCAACGACTCA
R:
CCCCCATAGCTCAGACATTCC
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]