RnoALTA0038789-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11639336-11640172:+
Coord C1 exon
chr3:11639336-11639443
Coord A exon
chr3:11640068-11640071
Coord C2 exon
chr3:11640072-11640172
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGCGTTTGCTATGCCCAGCCA
3' ss Score
3.15
Exon sequences
Seq C1 exon
GGAAAAGTCCCACTCGTGGTTGAGCACAGGCTGGTTTACCATGGTGATTGCGGTGGAGTTGTGTGACCATGTGCACGTGTATGGCATGGTCCCTCCCGACTACTGCAG
Seq A exon
CCAG
Seq C2 exon
CGGCCCCGCCTGCAGCGGATGCCGTACCACTACTATGAACCCAAGGGGCCAGATGAATGTGTCACCTACATCCAGAACGAGCACAGCCGTAAGGGCAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984-16-17,16-16,16-15-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(13.1=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(20.8=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCATGTGCACGTGTATGG
R:
ATCTGGCCCCTTGGGTTCATA
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]