RnoALTD0029420-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11639336-11641466:+
Coord C1 exon
chr3:11639336-11639439
Coord A exon
chr3:11639440-11639443
Coord C2 exon
chr3:11640068-11641466
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTGCGTTTGCTATGCCCAGCCA
3' ss Score
3.15
Exon sequences
Seq C1 exon
GGAAAAGTCCCACTCGTGGTTGAGCACAGGCTGGTTTACCATGGTGATTGCGGTGGAGTTGTGTGACCATGTGCACGTGTATGGCATGGTCCCTCCCGACTACT
Seq A exon
GCAG
Seq C2 exon
CCAGCGGCCCCGCCTGCAGCGGATGCCGTACCACTACTATGAACCCAAGGGGCCAGATGAATGTGTCACCTACATCCAGAACGAGCACAGCCGTAAGGGCAATCACCACCGCTTCATCACTGAGAAGAGGGTCTTCTCATCCTGGGCTCAACTCTACGGTATCACCTTCTCCCACCCCTCCTGGACCTAACCATCCTGTCCACAGACCTCGGACAGATACAAGTGAAGTGGCTCTGGGCCCAGCCATTTGACCACGGCCATCTTCCAGCCAGTTCAGACTGGCTGGAGTATTTCCCAGCCAATCAAATCAGGGCCTTGATGAGGGTTTTTTCCTCCAGCCAACTGGGGCTGGGGTTATCTCTTGGCCAATCAGGGATTTGGAATTCTGTATGGATTAATCGGGTGTCGGGGTCTTTCTCGTCTAGTCAGGGTCTGAGTGTAATCTATCAGGGTATAGGGGTCTTTCTGAGTCAGTCTGAAGCTTAGGACATGTCTTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984-15-16,16-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(13.1=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(20.8=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCATGTGCACGTGTATGG
R:
ATCTGGCCCCTTGGGTTCATA
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]